It looks like you copied a bunch of user modules into your C:\Program Files\SwordSearcher folder. Those will always be non-editable because of the location. Then you have copies of those in the user documents location, which is correct, but they won't be loaded there because you already have them loading from the program files. So, you need to remove them from the Program File location.
If you are confident of your backups, you can un-install SwordSearcher, and then manually delete the leftovers in the Program Files\Modules folder. They won't be removed automatically because you manually put them there. Then you can re-install SwordSearcher. This SHOULD be sufficient, since you already have the files in your documents location. Just be sure not to manually put files into your Program Files location.